Table 1
Mean differential expression signal ratios with standard deviations for
MAP and MTB genes hybridised with MAP strain 989 DNA extracted
from intracellular (Cy3) and extracellular (Cy5) cultures.
|
Gene name
|
Mean Ratio |
Standard |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
MAP gene Ratios x1 16S mean ratio |
||
|
16S [15]
(2D3) |
1.42 |
0.08 |
|
katG [16]
(2D4) |
1.60 |
0.20 |
|
65Kd [13]
(2D1) |
1.81 |
0.11 |
|
65Kd [14]
(2D2) |
1.90 |
0.14 |
|
IS900
[17] (2E1) |
2.01 |
0.11 |
|
p43 [18]
(2E2) |
2.38 |
0.24 |
|
Locus12
[42R] (2K2) |
2.51 |
0.10 |
|
Locus7
[32L] (2H4) |
2.58 |
0.20 |
|
mpa [3]
(2A3) |
2.61 |
0.24 |
|
Locus3
[24L] (2F4) |
2.64 |
0.13 |
|
MAP gene Ratios x2 16S mean ratio |
||
|
Locus6
pks [19R] (2E3) |
2.86 |
0.35 |
|
Locus12
[43L] (2K3) |
2.90 |
0.27 |
|
Locus11
[41L] (2K1) |
3.04 |
0.40 |
|
hupB [11]
(2C3) |
3.13 |
0.16 |
|
gsbA [9]
(2C1) |
3.24 |
0.73 |
|
Locus14
[47L] (2L3) |
3.26 |
0.34 |
|
Locus2
[23R] (2F3) |
3.30 |
0.33 |
|
Locus7
[33R] (2I1) |
3.31 |
0.28 |
|
Locus14
[46R] (2L2) |
3.32 |
0.31 |
|
Locus9
[36R] (2I4) |
3.42 |
0.42 |
|
Locus3
[25R] (2G1) |
3.59 |
0.08 |
|
Locus10
[38R] (2J2) |
3.60 |
0.22 |
|
drrC [7]
(2B3) |
3.75 |
0.53 |
|
sod [10]
(2C2) |
3.91 |
0.37 |
|
Locus13
[44R] (2K4) |
3.98 |
1.13 |
|
Locus5
[29R] (2H1) |
4.03 |
0.15 |
|
Locus6
[30L] (2H2) |
4.13 |
0.98 |
|
Locus8
[35L] (2I3) |
4.15 |
0.54 |
|
Locus10
[39L] (2J3) |
4.25 |
0.62 |
|
Locus9
[37L] (2J1) |
4.27 |
0.38 |
|
Locus6
[31R] (2H3) |
4.37 |
0.51 |
|
gsbB [5]
(2B1) |
4.51 |
0.38 |
|
Locus11
[40R] (2J4) |
4.52 |
0.83 |
|
Locus2
[22L] (2F2) |
4.52 |
0.83 |
|
Ratios x3 16S mean ratio |
||
|
Locus1
[21R] (2F1) |
4.59 |
0.33 |
|
mpa [1]
(2A1) |
4.70 |
0.86 |
|
Locus4
[26L] (2G2) |
4.75 |
0.08 |
|
Locus1
[20L] (2E4) |
4.98 |
0.49 |
|
gsa [6]
(2B2) |
5.19 |
1.55 |
|
Locus13
[45L] (2L1) |
5.57 |
0.39 |
|
Ratios x4 16S mean ratio |
||
|
Locus4
[27R] (2G3) |
5.69 |
0.61 |
|
Locus8
[34R] (2I2) |
5.91 |
0.41 |
|
Locus6
tetR [12L] (2C4) |
6.00 |
0.31 |
|
Ratios > x5 - 16S mean
ratio |
||
|
Locus5
des [28L] (2G4) |
8.77 |
6.95 |
|
gsc [4]
(2A4) |
9.44 |
1.19 |
|
gsd [8]
(2B4) |
15.54 |
6.59 |
Numbers in [] indicate gene number and orientation left or right of IS900 (Figure 4)
as described in Bull et al. (2000) (Full article.pdf)
|
Gene name
|
Mean Ratio |
Standard |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
MTB gene Ratios x0.5 16S mean ratio |
||
|
Rv0229c
(1J11) |
0.31 |
|
|
Rv0201c
(1N7) |
0.33 |
0.02 |
|
Rv0010c
(1B2) |
0.36 |
|
|
Rv0246
(1P12) |
0.39 |
0.01 |
|
Rv0114
(1L2) |
0.39 |
0.04 |
|
Rv0240
(1L12) |
0.43 |
0.07 |
|
Rv0025
(1A4) |
0.49 |
|
|
Rv0115
(1M2) |
0.52 |
0.01 |
|
Rv0195 (1P6) |
0.53 |
|
|
Rv0136
(1O3) |
0.55 |
0.08 |
|
sdaA
(1E9) |
0.55 |
|
|
echA1
(1K10) |
0.56 |
|
|
nadR
(1I9) |
0.57 |
|
|
Rv0104
(1M1) |
0.58 |
0.13 |
|
bioF2
(1H4) |
0.67 |
|
|
Rv0165c
(1M4) |
0.67 |
0.06 |
|
Rv0210
(1O8) |
0.70 |
0.08 |
|
Gene name
|
Mean Ratio |
Standard |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
MTB gene Ratios x2 16S mean ratio |
||
|
Rv0046c
(1F6) |
2.88 |
|
|
Rv0057
(1A8) |
4.06 |
|
|
Gene name
|
Mean Ratio |
Standard |
|
Gene name
|
Mean Ratio |
Standard |
|
Gene name
|
Mean Ratio |
Standard |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
(array
co-ordinate) |
(Intracellualar/extracellular) |
Deviation |
|
MTB gene Ratios x1 16S mean ratio |
|
MTB gene Ratios x1 16S mean ratio |
|
MTB gene Ratios x1 16S mean ratio |
||||||
|
Rv0029
(1E4) |
0.73 |
|
|
adhE
(1J4) |
1.05 |
0.10 |
|
ppiA
(1A2) |
1.37 |
|
|
Rv0198c
(1K7) |
0.73 |
|
|
nrdB
(1N11) |
1.07 |
|
|
Rv0063
(1G8) |
1.39 |
|
|
Rv0064
(1H8) |
0.76 |
|
|
oxyS
(1N2) |
1.08 |
0.11 |
|
Rv0078
(1F10) |
1.40 |
|
|
Rv0110
(1P1) |
0.76 |
0.06 |
|
gyrB
(1E1) |
1.09 |
|
|
Rv0037c
(1E5) |
1.42 |
|
|
hycP
(1E11) |
0.77 |
|
|
lipW
(1N9) |
1.09 |
0.10 |
|
sigG
(1E17) |
1.43 |
|
|
Rv0194
(1O6) |
0.79 |
0.02 |
|
mmpL11
(1O7) |
1.09 |
|||||